Reliable Biological Circuit Design Including Uncertain Kinetic Parameters

نویسندگان

  • Eva Sciacca
  • Salvatore Spinella
چکیده

In the context of possibilistic decision making, this work deals with biological design problems particularly important in the near future when it will be possible to produce biological entities and synthetic organisms for pharmacological and medical usage. The biological systems is investigated in terms of performances or main key features of the system. The analysis of the biological system is based on the idea that the set of parameters involved in the model can be classified into two different typologies: the uncertain kinetic parameters and the control design parameters. In order to design a robust and reliable biological system with respect to a target performance, the design parameter values are set up to balance the uncertainty of the kinetic parameters. To take into account these uncertainties arising from the estimations of the kinetic parameters, the function representing the feedback of the system is fuzzified and a measure of failure of the designed biological circuit is minimized to reach the required performance. An application of this methodology is illustrated on a case study of an autonomously oscillatory system: the Drosophila Period Protein which is a central component of the Drosophila circadian clocks. Finally, the results of the fuzzy methodology are compared with a deterministic method.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Fuzzy Stochastic Petri Nets for Modeling Biological Systems with Uncertain Kinetic Parameters

Stochastic Petri nets (SPNs) have been widely used to model randomness which is an inherent feature of biological systems. However, for many biological systems, some kinetic parameters may be uncertain due to incomplete, vague or missing kinetic data (often called fuzzy uncertainty), or naturally vary, e.g., between different individuals, experimental conditions, etc. (often called variability)...

متن کامل

A Robust Reliable Forward-reverse Supply Chain Network Design Model under Parameter and Disruption Uncertainties

Social responsibility is a key factor that could result in success and achieving great benefits for supply chains. Responsiveness and reliability are important social responsibility measures for consumers and all stakeholders that strategists and company managers should be concerned about them in long-term planning horizon. Although, presence of uncertainties as an intrinsic part of supply chai...

متن کامل

Robust Design of Biological Circuits: Evolutionary Systems Biology Approach

Artificial gene circuits have been proposed to be embedded into microbial cells that function as switches, timers, oscillators, and the Boolean logic gates. Building more complex systems from these basic gene circuit components is one key advance for biologic circuit design and synthetic biology. However, the behavior of bioengineered gene circuits remains unstable and uncertain. In this study,...

متن کامل

Interrogating the topological robustness of gene regulatory circuits by randomization

One of the most important roles of cells is performing their cellular tasks properly for survival. Cells usually achieve robust functionality, for example, cell-fate decision-making and signal transduction, through multiple layers of regulation involving many genes. Despite the combinatorial complexity of gene regulation, its quantitative behavior has been typically studied on the basis of expe...

متن کامل

Optimized experimental design for the estimation of enzyme kinetic parameters: an experimental evaluation.

A set of compounds (n = 30), including traditional cytochrome P450 substrates and compounds from AstraZeneca's compound library, was used in an experimental evaluation of an optimal design approach (ODA) for the estimation of enzyme kinetic parameters (CL(int), V(max), and K(m)). A depletion method previously shown to provide reliable results, the multiple depletion curves method (MDCM), was us...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2010